PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g09500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 289aa    MW: 31824.3 Da    PI: 10.0211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g09500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11131178454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRd++N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  Vradi02g09500.1 131 SKACREKLRRDKLNDKFVELGSILEPG---RPTKTDKAAILIDAVRMVTHL 178
                      6789**********************8...89***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.173127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-7130183No hitNo description
PfamPF000103.5E-9131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13132202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1708.9E-4193226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
FFSLTSKRAS KPDAHHTPTH ITRSLCLFPS KTKQKRVFRA ENPQFSGNRI CTMVSRENTN  60
WLFDYGLIDD IPAVDASFTV PSSGFTWPPN ALNATSNVGV EVDGSLVDSD GLKESGSKKR  120
VRSETYAASS SKACREKLRR DKLNDKFVEL GSILEPGRPT KTDKAAILID AVRMVTHLRG  180
EAQKLKDSNQ GLQEKIKELK AEKNELRDEK QVLKAEKEKL EQQLKSLNAQ PSFMPPPAAI  240
PAAFAAQGQA HGNKLVPFIS YPGVAMWQFM PPAAVDTSQD HVLRPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985610.0BT098561.1 Soybean clone JCVI-FLGm-12L19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494623.11e-174PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-111ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0S3SAL61e-158A0A0S3SAL6_PHAAN; Uncharacterized protein
STRINGGLYMA12G16560.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-92bHLH family protein